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1.1 GENERAL REMARKS
About this Document
Summary of Functionality
Applicability
1.2 CONCEPTS AND TERMINOLOGY
LINK bonds
The ADF QM/MM Hybrid Potential
Nomenclature and Terminology
Partitioning into QM and MM regions
1.3 IMPLEMENTATION
ADF QM/MM
Limitations, Bugs and Deficiencies
2.1 INPUT: THE ESSENTIALS
Overview
Defining the Coordinates
QMMM key block
Restarts
Geometry Constraints and Fixing Coordinates of MM atoms
Miscellaneous Notes
2.2 QMMM KEYBLOCK OPTIONS
Introduction
Example Input
Description of Options
2.3 THE FORCE FIELD FILE
General Notes
Section by Section Description
2.4 SETTING UP A QM/MM SIMULATION - A `WALK THRU'
Example A: Cytocine
Example B: Pd+ - Ethene p-complexation Linear Transit