|
Import Coordinates...
Use this menu command to import the geometry of your molecule from
file.
You can import coordinates from a .runkf file generated by BAND, a
.t21 file generated by ADF, from a .band file as saved
by BANDinput, or from a text file (for example, a .mol or a .xyz file).
If you import coordinates from a .t21 file note that the extension
must be .t21. A name
like 'TAPE21' will not work. Also, bond information and lattice vectors
are not present, just the coordinates
are imported and bonds will be guessed (and no distinction will be made
between different
kinds of bonds).
Importing from a .runkf, or .band file is straight-forward:
coordinates, bond information and lattice vectors are present so you
will get exactly what you saved.
Importing from a .mol file will also give you both the coordinates
and bond information of the file,
but not the lattice vectors.
Importing from a text file is rather flexible: BANDinput needs three
real numbers next to each other. These will be interpreted as x, y and
z coordinate. One additional integer
or the abbreviation of an element is also needed to identify the kind
of atom.
To be recognized as real, the real number must contain a '.' (dot),
and at least one digit before or after the dot. Real numbers with
exponents (E or D) are not recognized.
If an integer is used to specify the element (the nuclear charge),
it may not contain a '.' (dot).
Bond information and lattice vectors are not imported, even if
present in your file (unless importing from a .band file). After you
have imported some coordinates, BANDinput tries to guess the bonds
between the imported atoms.
This might not be very accurate.
Z-matrix import is not available.
Directly after the 'Import Coordinates...' command the newly
imported atoms are selected. This makes it easy to reposition them with
respect to other atoms that
may already be present, remove the automatically guessed bonds, or use
other operations on the newly imported atoms and bonds.
|