The ADF modeling suite played an important role in this sample of recent research highlights from the recent chemistry and physics literature. Illustrations and summaries have been kindly provided by the authors or checked with them for correctness. Highlights before 2011 are archived.
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Hydrogen evolution catalyst characterized with EPR Key concepts: EPR, IR, ZORA, spin distribution W. Wang, M. J. Nilges, T. B. Rauchfuss, and M. Stein, Isolation of a Mixed Valence Diiron Hydride: Evidence for a Spectator Hydride in Hydrogen Evolution Catalysis J. Am. Chem. Soc. 135, 3633-3639 (2013) |
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BAND calculations explain break-through molecular charge transport experiment Key concepts: BAND, NEGF, charge transport, orbital levels M. L. Perrin, C. J. O. Verzijl, C. A. Martin, A. J. Shaikh, R. Eelkema, J. H. van Esch, J. M. van Ruitenbeek, J. M. Thijssen, H. S. J. van der Zant, and D. Dulic Large tunable image-charge effects in single-molecule junctions. Nature Nanotech. 8, 282-287 (2013) |
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Characterization of an Atom-Precise Bimetallic Nanocluster Key concepts: chemical analysis, TDDFT, ZORA S. R. Biltek, S. Mandal, A. Sen, A. C. Reber, A. F. Pedicini, S. V. Khanna, Synthesis and Structural Characterization of an Atom-Precise Bimetallic Nanocluster, Ag4Ni2(DMSA)4 , J. Am. Chem. Soc. 135, 26-29 (2013) |
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Insights into the Bonding in Dinuclear Metalloradicals with Relativistic DFT Key concepts: spin-orbit coupling, TDDFT, EPR, molecular orbital analysis E. F. van der Eide, P. Yang, E. D. Walter, T. Liu, and R. M. Bullock, Dinuclear Metalloradicals Featuring Unsupported Metal-Metal Bonds Angew. Chem. Int. Ed. 51, 8361-8364 (2012) |
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ZORA DFT explains subtle 129Xe NMR parameters Key concepts: ZORA NMR (scalar and spin-orbit), MD-averaged properties A. Bagno, G. Saielli,
Understanding the extraordinary deshielding of 129Xe in a permetallated cryptophane by relativistic DFT.
Chem. Eur. J. 18, 7341-7345 (2012)
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Chemical analysis of bicyclo(1.1.1) (R2E)3Bi2 complexes Key concepts: electron localization function (ELF), NBO, energy decomposition analysis, ZORA K. Yu. Monakhov and C. Gourlaouen, On the insertion of ML2 (M = Ni, Pd, Pt; L = PH3) into the E-Bi bond (E = C, Si, Ge, Sn, Pb) of a bicyclo[1.1.1]pentane motif: A case for a carbenoid-stabilized Bi(0) species? Organometallics 31, 4415-4428 (2012) |
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Understanding OLED phosphorescence with SOC-TDDFT Key concepts: spin-orbit coupling TDDFT, magnetic circular dichroism A. R. G. Smith, M. J. Riley, P. L. Burn, I. R. Gentle, S.-C. Lo, and B. J. Powell Effects of Fluorination on Iridium(III) Complex Phosphorescence: Magnetic Circular Dichroism and Relativistic Time-Dependent Density Functional Theory Inorg. Chem., 51, 2821-2831 (2012). | |
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Advances in Frozen-Density Embedding: State-Selective Excitations, Charge Transfer, Spin Densities
A. Kovyrshin and J. Neugebauer
Potential-energy surfaces of local excited states from subsystem- and selective Kohn-Sham-TDDFT.
Chem. Phys., 391, 147-156 (2011).
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Charge transfer to/from Cu(111) controlled by benzene functionalization Key concepts: dispersion-corrected DFT (DFT-D3), symmetrized fragment orbital (SFO) analysis, electrostatic potential, ADF-GUI S. Simpson and E. Zurek, Substituted Benzene Derivatives on the Cu(111) Surface J. Phys. Chem. C, 116, 12636-12643 (2012). | |
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Diels-Alder reactivity of fullerene affected by encapsulation Key concepts: transition states, dispersion-corrected DFT (GGA-D3), QUILD M. Garcia-Borràs, S. Osuna, J. M. Luis, M. Swart, and M. Solà, The Exohedral Diels-Alder Reactivity of the Titanium Carbide Endohedral Metallofullerene Ti2C2@D3h-C78: Comparison with D3h-C78 and M3N@D3h-C78 (M=Sc and Y) Reactivity Chem. Eur. J., 18, 7141-7154 (2012). |
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Ru XANES spectra calculated with spin-orbit-coupling TDDFT Key concepts: X-ray Absorption Near-Edge Spectroscopy, core excitations, spin-orbit coupling, TDDFT I. Alperovich, G. Smolentsev, D. Moonshiram, J.W. Jurss, J.J. Concepcion, T.J. Meyer, A. Soldatov, Y. Pushkar Understanding the Electronic Structure of 4d Metal Complexes: From Molecular Spinors to L-Edge Spectra of a di-Ru Catalyst J. Am. Chem. Soc., 133 15786-15794 (2011). |
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NEXAFS spectra calculated with DFT-TS Key concepts: Near-Edge X-ray Absorption Spectroscopy, core excitations, diffuse basis sets, PDOS R. De Francesco, M. Stener, and G. Fronzoni, Theoretical Study of Near-Edge X-ray Absorption Fine Structure Spectra of Metal Phthalocyanines at C and N K-Edges J. Phys. Chem. A, 116 2285-22894 (2012). |
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Silica support strengthens water adsorption on graphene Key concepts: periodic DFT with BAND, dispersion-corrected DFT (GGA-D3), adsorption, band structures V. M. Bermudez, J. T. Robinson, Effects of Molecular Adsorption on the Electronic Structure of Single-Layer Graphene Langmuir, 27, 11026-11036 (2011). |
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Char combustion modeled with ReaxFF Key concepts: ReaxFF, molecular dynamics, kinetics F. Castro-Marcano, A. M. Kamat, M. F. Russo Jr., A. C. T. van Duin, J. P. Matthews, Combustion of an Illinois No. 6 coal char simulated using an atomistic char representation and the ReaxFF reactive force field Combustion and Flame, 159 (3), 1272-1285 (2012). |
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A coupled TDDFT - atomistic electrodynamics model to study excitations in adsorbate-nanoparticle systems Key concepts: TDDFT, DRF, DIM/QM, Surface-enhanced Raman spectroscopy, plasmon-enhanced photochemistry S. M. Morton and L. Jensen, A discrete interaction model/quantum mechanical method to describe the interaction of metal nanoparticles and molecular absorption J. Chem. Phys. 135, 134103 (2011) |
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Hydrogen bonds in guanine quartets: cooperative effects Key concepts: dispersion-corrected DFT (DFT-D), energy decomposition analysis, solvation (COSMO) C. Fonseca Guerra, H. Zijlstra, G. Paragi, and F. M. Bickelhaupt, Telomere Structure and Stability: Covalency in Hydrogen Bonds, Not Resonance Assistance, Causes Cooperativity in Guanine Quartets. Chem. Eur. J. 45, 12612 (2011) |
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Charge density and NMR unravel Ni-agostic bonding Key concepts: AIM, spin-orbit coupling NMR, bonding analysis W. Scherer, V. Herz, A. Bruck, C. Hauf, F. Reiner, S. Altmannshofer, D. Leusser, and D. Stalke, The Nature of β-Agostic Bonding in Late-Transition-Metal Alkyl Complexes Angew. Chem. Int. Ed. 50, 285 (2011) |
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Pt σ-donation induces strong relativistic effects on 29Si NMR Key concepts: spin-orbit coupling NMR, bonding analysis, NBO L. A. Truflandier, E. Brendler, J. Wagler, J. Autschbach, 29Si DFT/NMR Observation of Spin-Orbit Effect in Metallasilatrane Sheds Some Light on the Strength of the Metal→Silicon Interaction Alkyl Complexes Angew. Chem. Int. Ed. 50, 255 (2011) |
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| N3 dye for Dye-Sensitized Solar Cells (DSSCs) modeled Key concepts: thermodynamics, kinetics, relativity (with ZORA), solvent effects A. M. Asaduzzaman and G. Schreckenbach, Interactions of the N3 dye with the iodide redox shuttle: quantum chemical mechanistic studies of the dye regeneration in the dye-sensitized solar cell. Physical Chemistry Chemical Physics, 13, 15148 (2011). |
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| NMR of a Lead - Platinum superatom Key concepts: NMR, shielding constants, coupling constants, chemical shift, relativity (with ZORA), spin-orbit coupling, finite nucleus, solvent effects (COSMO) B. Le Guennic, and J. Autschbach, [Pt@Pb12]2- - A challenging system for relativistic density functional theory calculations of 195Pt and 207Pb NMR parameters. Canadian Journal of Chemistry, 89 (7), 814 (2011). |
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| Modeling the hydrogen bonds, pi-stacking and solvent effects in DNA Key concepts: dispersion-corrected DFT (DFT-D), solvent effects (COSMO) J. Poater, M. Swart, C.Fonseca Guerra and F. M. Bickelhaupt, Selectivity in DNA replication. Interplay of steric shape, hydrogen bonds, n-stacking and solvent effects. Chemical Communications 47, 7326 (2011). |
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| Quantitative AFM with CO-terminated tips Key concepts: dispersion-corrected DFT (DFT-D) Z. Sun, M. P. Boneschanscher, I. Swart, D. Vanmaekelbergh, and P. Liljeroth, Quantitative Atomic Force Microscopy with Carbon Monoxide Terminated Tips. Physical Review Letters 106, 046104 (2011). |
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| Relativistic effects up the voltage in batteries Key concepts: periodic DFT with BAND, relativistic effects (scalar and spin-orbit coupling) with ZORA R. Ahuja, A. Blomqvist, P. Larsson, P. Pyykkö, and P. Zaleski-Ejgierd, Relativity and the Lead-Acid Battery. Physical Review Letters 106, 018301 (2011). |




