Errors runing ADF using MPI on a cluster

Search:

Errors runing ADF using MPI on a cluster

From: Y. Huang <huang_at_email.domain.hidden>
Date: Mon, 15 Aug 2005 17:21:32 -0400

Hello,

I am running ADF jobs on a dual Opteron cluster connected by Myrinet
interconnect. OS is SuSE. MPICH-GM has been installed on the system. I
have set the following environment variables in .bashrc

export ADFHOME=/home/huang/software/ADF/adf2004.01
export ADFBIN=$ADFHOME/bin
export ADFRESOURCES=$ADFHOME/atomicdata
export SCMLICENSE=$ADFHOME/license
export MPIDIR=/opt/mpigm
export SCM_MACHINEFILE=/home/huang/nodes
export NSCM=4
export SCM_TMPDIR=/tmp
export SCM_USETMPDIR=yes
export P4_RSHCOMMAND=/usr/bin/ssh

The file /home/huang/nodes contains 4 nodes.

I got the following errors when I ran the example accompanied with the ADF
package in the directory of examples/adf/e_AIM_HF:

...
/bin/cp: omitting directory `/dev'
/bin/cp: omitting directory `/etc'
/bin/cp: omitting directory `/home'
/bin/cp: omitting directory `/lib'
/bin/cp: omitting directory `/lib64'
/bin/cp: omitting directory `/lost+found'
/bin/cp: omitting directory `/media'
/bin/cp: omitting directory `/mnt'
/bin/cp: omitting directory `/opt'
/bin/cp: omitting directory `/opt.orig'
/bin/cp: omitting directory `/proc'
/bin/cp: omitting directory `/root'
/bin/cp: omitting directory `/sbin'
/bin/cp: omitting directory `/srv'
/bin/cp: omitting directory `/sys'
/bin/cp: omitting directory `/tmp'
/bin/cp: omitting directory `/usr'
/bin/cp: omitting directory `/var'
...
 <Aug15-2005> <11:56:10> ADF 2004.01 RunTime: Aug15-2005 11:56:10
 <Aug15-2005> <11:56:10> *** (NO TITLE) ***
 <Aug15-2005> <11:56:10> RunType : SINGLE POINT
 <Aug15-2005> <11:56:10> NO ATOMS INPUT
 <Aug15-2005> <11:56:10> ardel: last array to be deleted not found
 <Aug15-2005> <11:56:10> NO ATOMS INPUT
 <Aug15-2005> <11:56:10> END
ERROR DETECTED
 ************* Input file not found *************
KFEXIT
Contents of rdt21.res:
cat: rdt21.res: No such file or directory
Contents of WFN-alpha:
cat: WFN-alpha: No such file or directory
Contents of WFN-beta:
cat: WFN-beta: No such file or directory

Any suggestion is appreciated.

Yiye

**********************************
  Faculty of Science
  University of Waterloo
  Waterloo, Ontario N2L 3G1
  E-mail: huang_at_uwaterloo.ca
  Tel: (519) 888-4567 ext.6110
**********************************
| (\
| http://hpc.uwaterloo.ca ( \
|__________________________) ) />
                      / ) / //))/
                      \ \_/ /////
                       \ /
                        \_ /
                          | |
                          |___|
Received on 2005-08-15 23:20:26

This archive was generated by hypermail 2.2.0 : 2006-11-02 07:00:02 CET