Re: how to customize my ADF run environment.

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Re: how to customize my ADF run environment.

From: Alexei Yakovlev <yakovlev_at_email.domain.hidden>
Date: Wed, 17 Aug 2005 16:14:32 +0200

Dear Yong Wang,

MAXMEMORYUSAGE is an ADF keyword, not an environment variable. So you
need to specify it in the input file as described in the user's guide at
http://www.scm.com/Doc/Doc2004.01/ADFUsersGuide/page195.html

SCM_VECTORLENGTH sets the integration vector length which affect
performance and memory usage of ADF. Please also check
http://www.scm.com/Doc/Doc2004.01/ADFUsersGuide/page196.html on the
equivalent ADF input keyword.

SCM_IOBUFFERSIZE sets the size in megabytes of the I/O buffer for the KF
file system. You need to provide only a number without the Mb letters
after it. By the way, the same applies to the MAXMEMORYUSAGE keyword.

The format of the .machine file is MPI implementation-dependent. Since
you are using MPICH you need to separate host name and the process count
with a colon ":". Please check the MPICH documentation to be sure.

Best regards,
Alexei Yakovlev
SCM

Yong Wang (王永) wrote:

>Dear ADFers,
>
>Our PC cluster's situation is following
>CPUs: Intel Xeon 2.4G *2 /node
>network card: 1000M
>Parallel: MPICH 1.2.6
>Memory: 1G
>
>my first question is
>I have set MAXMEMORYUSAGE=400Mb, but in the output file, it appears to be 80Mb,
>why this happen? do I miss some other setting?
>
>my second question is
>how can I get information for the following environment set?
>SCM_VECTORLENGTH
>SCM_IOBUFFERSIZE
>
>and last question is
>when I submit a parallel job, I must write my .machine file like following
>c0101
>c0101
>c0102
>c0102
>
>,not
>c0101 2
>c0102 2
>(it will stop and give error message)
>How to avoid this?
>
>Any response answer will be greatly appreciated!
>
>Have a nice day and GOOD LUCK !
>
>
>Yours, truly
>Yong Wang
>
>
>environment set in .bashrc
>#### ADF2004.01 ####
>export ADFHOME=/usr/local/adf2004.01
>export ADFBIN=$ADFHOME/bin
>export ADFRESOURCES=$ADFHOME/atomicdata
>export SCMLICENSE=$ADFHOME/license
>export SCM_IOBUFFERSIZE=256Mb
>export MAXMEMORYUSAGE=400Mb
>export SCM_TMPDIR=$HOME/tmp
>export SCM_USETMPDIR=yes
>export SCM_MACHINEFILE=$HOME/.machine
>export NSCM=4
>export MPIDIR=/export/mpi/mpich_intel
>PATH=$MPIDIR/bin:$ADFBIN:$ADFRESOURCES:$PATH
>export PATH
>export SCM_ERROR_MAIL=no
>###########################################
>
>ADF output information
>###########################################
> IO buffersize (Mb): 256.000000
> Max memory usage (Mb): 80.000000
> Dynamic allocation blocks (Mb):
> Reals: 1.000000
> Integers: 0.500000
> Logicals: 0.031250
> Strings: 1.500000
>##########################################
>
>
>---------------------------------------------------------------------
>Ph.D. student of Prof. Keli Han
>
>State Key Laboratory of Atomic and Molecular Reaction Dynamics,
>Dalian Institute of Chemical Physics, Chinese Academy of Sciences
>Dalian 116023, P. R. China
>
>Email: wangyong_at_dicp.ac.cn
>Webpage:
>http://www.beam.dicp.ac.cn/groupmem/personal/ywang/ywang.htm
>
>--------------------------------------------------------------------
>
>
>
Received on 2005-08-17 16:13:28

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