Utilities
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* AMSbatch

  * Overview

  * Loading systems from file

  * Restart

* AtomTyping

  * Command Line Tool

  * Python scripting

* Conformers

  * New in Conformers-2025

    * Overview

    * Main Input Options

    * Examples

    * References

    * Other input options

* Trajectory Analysis

  * New in Trajectory Analysis-2025

  * New in Trajectory Analysis-2023

  * Quickstart Guide

  * Trajectory selection

  * Atom Selection

  * Convergence Check

  * Radial Distribution Function (RDF)

    * Description

    * Atom Selection

    * Options

  * Histogram

  * Autocorrelation Functions

    * Description

    * Properties

    * Options

    * Keywords

  * Mean Square Displacement

    * Description

    * Properties

    * Options

    * Keywords

  * AverageBinPlot

  * Viscosity

  * Diffusion Coefficient

    * From Velocity Autocorrelation

    * From Mean Square Displacement

  * Ionic Conductivity

* VCD Analysis: VCDtools

  * General Theory

  * General Coupled Oscillator Analysis

  * Available options
