Atoms, Bonds, Elements, Electrostatic Embedding
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* Atoms

  * Adding and Modifying Atoms

  * Changing the order of atoms

  * Atomic species

  * Atom Attributes

  * Atom attributes in the ChemicalSystem

  * Engine/Module-Specific Atom Attributes Classes

  * Atom class

* Bonds

  * Bond Class

  * Bonds Class

  * Bonds methods in the Chemical System

* Elements

  * "Element"

  * "Elements"

* Electrostatic Embedding
