GUI Manual 2026.1
*****************

This manual contains technical and background information on the
Graphical User Interface (GUI).

* "(PDF) GUI Manual"

**Table of Contents:**

* General

  * Introduction

  * Release 2026.1

  * Release 2025.1

  * Release 2024.1

  * Release 2023.1

  * Release 2022.1

* Set up

  * Mouse

  * Running Remotely

  * OpenGL3.2+, fallback mode

  * Font issues

  * AMSjobs Queues

  * Quantum ESPRESSO

* SCM menu

* Background processes with no interface

  * scmd: communication between GUI modules

  * scmjobd: monitor running jobs

* Viewing your molecule

  * Molecule style: Balls and Sticks, Sticks, or Wireframe

  * Camera position: view direction

  * 3D

  * Fly to selection

  * Reset View

* Mouse Interaction

  * Rotate, Translate and Zoom

  * Selecting

* Keyboard Shortcuts

  * AMSinput

  * AMSview

  * AMSmovie

  * AMSlevels

  * AMStail (Logfile)

  * AMSoutput

  * AMSspectra

  * AMSbandstructure

  * AMSdos

  * AMSjobs

* Selecting

* AMSpreferences

  * General

  * Restore defaults

  * Panels

* AMSinput

  * Input: options

  * Input: buttons

  * Searching

  * Crystals and Slabs

  * Slab Builder

  * Microsolvation Builder

  * Builder (packmol)

  * Nanoparticle Builder

  * Nanotube Builder

  * Building molecules

  * Tuning Geometry: translation, rotation, position with respect to
    plane

  * Importing and exporting your molecule

  * Regions

  * Proteins (from PDB or mol2 files)

  * Presets and Defaults

* AMSjobs

  * Jobs

  * Queues

  * Tools: set up many jobs and collect data from many jobs

  * Series of jobs depending on each other

* AMSview

  * Visualization methods

  * Fields

  * Properties

  * Comparing data from several molecules

  * Temporary Files

  * Calculating Fields

* AMSmovie

  * Geometries

  * Scalar Atomic Properties

  * Atomic Vectors

  * Graphs

  * Temperature Profile

  * Trajectory Analysis

  * Export trajectories to other formats

* BumblebeeGUI

* KFbrowser

  * Non-expert mode

  * Expert mode

* Spreadsheets (.xlsx)

  * Export AMS results to spreadsheet format

  * Results available in spreadsheet format

* Conformers

* Fukui Function

* Minimum Energy Crossing Point

* Quantum ESPRESSO

* ParAMS

  * General

  * Import reference calculations

  * Parameters

  * Graphs

  * Settings

  * Results

  * Info

* AMScrs: COSMO-RS

  * Menu Commands

* AMSkinetics (MKMCXX and Zacros)

  * MKMCXX Microkinetics

  * Zacros Kinetic Monte Carlo

* GUI Environment Variables

* AMSpackages

  * General

* Required Citations

  * Authors and General References

  * External programs and Libraries
