FlexMD
******

FlexMD is a Python library for flexible multi-scale molecular dynamics
simulation, developed by Rosa E. Bulo, Christoph Jacob, Stefano
Borini, Tao Jiang, Jelle Boereboom, Stanislav Simko, and Hans van
Schoot.

* Basic philosophy and intended usage

* FlexMD functionality summary

* Introduction

* Molecular Dynamics

* Multi-scale Molecular Dynamics

* Biased Molecular Dynamics

* Working with FlexMD

  * Creating a molecule object

  * Creating a ForceJob

  * Creating and running the MD job

* Required Citations

  * External programs and libraries

* References
