Index

_

__len__() (Reactant method) _adjust_stabilities() (Reactant method) _get_fake_transitionstates() (ACErxnNetwork method) _get_n_shortest_paths() (ACErxnNetwork method)

_get_sp_results() (ACErxnNetwork method) _guess_atomic_charges() (Reactant method) _map_to_submolecules() (Reactant method) _prepare_state() (Reactant method) _result_type (ACErxnJob attribute)

A

ACErxnJob (class in scm.acerxn.scm_wrappers.acerxn_job) ACErxnNetwork (class in scm.acerxn.scm_wrappers.acerxn_network)

ACErxnResults (class in scm.acerxn.scm_wrappers.results) amsinput_from_settings() (in module scm.acerxn.scm_wrappers.input_settings)

C

check_fragments() (Reactant method)

D

default_settings() (ACErxnNetwork static method)

F

from_inputfile() (ACErxnJob class method)

from_molecules() (Reactant class method) from_rkf() (ACErxnNetwork class method)

G

generate() (ACErxnNetwork method) generator (ACErxnNetwork property) get_acenetwork() (ACErxnNetwork method) get_active_atoms() (Reactant method) get_all_paths() (ACErxnNetwork method) get_chemdists_for_path() (ACErxnNetwork method) get_elements() (Reactant method) get_fragment_indices() (Reactant method) get_fragment_indices_sumoffragments() (Reactant method) get_graph() (ACErxnNetwork method) get_input() (ACErxnJob method)

get_intermediates() (ACErxnNetwork method) (ACErxnResults method) get_n_shortest_paths() (ACErxnNetwork method) get_network() (ACErxnResults method) get_network_of_shortest_paths() (ACErxnResults method) get_path_block() (ACErxnNetwork method) get_reacted_reactant() (ACErxnNetwork method) get_runscript() (ACErxnJob method) get_shortest_paths() (ACErxnNetwork method) get_subnetwork() (ACErxnNetwork method) guess_fragments() (Reactant method)

H

has_graph() (ACErxnNetwork method)

has_intermediates() (ACErxnNetwork method) has_network() (ACErxnResults method)

I

identify_identical_fragments_with_chargedifferences() (Reactant method)

L

load_external() (ACErxnJob class method)

O

optimize() (ACErxnNetwork method)

order_paths() (ACErxnNetwork method)

R

Reactant (class in scm.acerxn.scm_wrappers.reactant) read() (ACErxnNetwork class method) (Reactant class method)

read_energy_landscape() (ACErxnNetwork method)

S

set_fragments() (Reactant method) set_graph() (ACErxnNetwork method) set_intermediates() (ACErxnNetwork method)

set_regions() (Reactant method) settings_from_amsinput() (in module scm.acerxn.scm_wrappers.input_settings) store_submolecules_as_intermediate() (ACErxnNetwork method)

T

to_ace_intermediate() (Reactant method)

trim_edges() (ACErxnNetwork method)

W

write() (ACErxnNetwork method) (Reactant method)

write_graph() (ACErxnNetwork method) write_reactant() (Reactant method) write_xyz() (Reactant method)