Index

A

add_to_log() (scm.reactmap.RMLogger method)

atom_assignment() (in module scm.reactmap.heuristics.upper_bound)

B

bond_assignment() (in module scm.reactmap.heuristics.lower_bound)

bonds() (in module scm.reactmap.heuristics.lower_bound) branch_tight() (in module scm.reactmap.heuristics.lower_bound)

C

conclude_mapping() (scm.reactmap.RMLogger method)

critical() (scm.reactmap.RMLogger method)

E

error() (scm.reactmap.RMLogger method)

G

get_atom_implicitH() (scm.reactmap.Molecule method)

get_graph() (scm.reactmap.Molecule method) greedy_map() (in module scm.reactmap.heuristics.upper_bound)

H

HeuristicsManager (class in scm.reactmap.heuristics)

I

info() (scm.reactmap.RMLogger method)

invert_solution() (scm.reactmap.Reaction method) is_feasible() (scm.reactmap.Reaction method)

M

Map (class in scm.reactmap) module scm.reactmap.heuristics scm.reactmap.heuristics.lower_bound scm.reactmap.heuristics.upper_bound

Molecule (class in scm.reactmap)

N

new_reaction() (scm.reactmap.RMLogger method)

O

open_new_log_file() (scm.reactmap.RMLogger method)

output_image() (scm.reactmap.Reaction method)

P

print_message() (scm.reactmap.RMLogger method)

Q

quadratic_assignment_problem() (in module scm.reactmap.heuristics.upper_bound)

R

Reaction (class in scm.reactmap) restore_defaults() (scm.reactmap.Settings method)

RMLogger (class in scm.reactmap) run() (scm.reactmap.heuristics.HeuristicsManager method)

S

scm.reactmap.heuristics module scm.reactmap.heuristics.lower_bound module scm.reactmap.heuristics.upper_bound module

set_log_level() (scm.reactmap.RMLogger method) set_print_level() (scm.reactmap.RMLogger method) Settings (class in scm.reactmap) show_options() (scm.reactmap.Settings method) show_results() (scm.reactmap.Reaction method) start_new_log_file() (scm.reactmap.RMLogger method) status() (scm.reactmap.RMLogger method)

T

try_lb() (scm.reactmap.heuristics.HeuristicsManager method)

try_ub() (scm.reactmap.heuristics.HeuristicsManager method)

W

warning() (scm.reactmap.RMLogger method)

write_data() (scm.reactmap.RMLogger method)