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Examples
Basic usage
Mapping multiple reactions
Using the logger to control output and logging information
Changing problem settings with reactmap.Settings
Using active atoms
Using active bonds
scm.reactmap.Molecule
scm.reactmap.Reaction
scm.reactmap.Map
scm.reactmap.Settings
scm.reactmap.RMLogger
scm.reactmap.heuristics
scm.reactmap.heuristics.HeuristicsManager
scm.reactmap.heuristics.lower_bound
scm.reactmap.heuristics.upper_bound
reactmap
Documentation
/
reactmap
/
Index
Index
A
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B
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C
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E
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G
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H
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I
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M
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N
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O
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P
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Q
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R
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S
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T
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W
A
add_to_log() (scm.reactmap.RMLogger method)
atom_assignment() (in module scm.reactmap.heuristics.upper_bound)
B
bond_assignment() (in module scm.reactmap.heuristics.lower_bound)
bonds() (in module scm.reactmap.heuristics.lower_bound)
branch_tight() (in module scm.reactmap.heuristics.lower_bound)
C
conclude_mapping() (scm.reactmap.RMLogger method)
critical() (scm.reactmap.RMLogger method)
E
error() (scm.reactmap.RMLogger method)
G
get_atom_implicitH() (scm.reactmap.Molecule method)
get_graph() (scm.reactmap.Molecule method)
greedy_map() (in module scm.reactmap.heuristics.upper_bound)
H
HeuristicsManager (class in scm.reactmap.heuristics)
I
info() (scm.reactmap.RMLogger method)
invert_solution() (scm.reactmap.Reaction method)
is_feasible() (scm.reactmap.Reaction method)
M
Map (class in scm.reactmap)
Molecule (class in scm.reactmap)
N
new_reaction() (scm.reactmap.RMLogger method)
O
open_new_log_file() (scm.reactmap.RMLogger method)
output_image() (scm.reactmap.Reaction method)
P
print_message() (scm.reactmap.RMLogger method)
Q
quadratic_assignment_problem() (in module scm.reactmap.heuristics.upper_bound)
R
Reaction (class in scm.reactmap)
restore_defaults() (scm.reactmap.Settings method)
RMLogger (class in scm.reactmap)
run() (scm.reactmap.heuristics.HeuristicsManager method)
S
scm.reactmap.heuristics (module)
scm.reactmap.heuristics.lower_bound (module)
scm.reactmap.heuristics.upper_bound (module)
set_log_level() (scm.reactmap.RMLogger method)
set_print_level() (scm.reactmap.RMLogger method)
Settings (class in scm.reactmap)
show_options() (scm.reactmap.Settings method)
show_results() (scm.reactmap.Reaction method)
start_new_log_file() (scm.reactmap.RMLogger method)
status() (scm.reactmap.RMLogger method)
T
try_lb() (scm.reactmap.heuristics.HeuristicsManager method)
try_ub() (scm.reactmap.heuristics.HeuristicsManager method)
W
warning() (scm.reactmap.RMLogger method)
write_data() (scm.reactmap.RMLogger method)