ReaxFF as an AMS engine¶
The ReaxFF AMS engine enables efficient parallel calculations using this empirical reactive molecular mechanics potential. The engine shares all core routines with the standalone ReaxFF program, guaranteeing identical energies and forces between these two codes.
The ReaxFF engine currently supports only molecular (free boundary) and 3D-periodic systems. Non-orthorhombic lattices are supported in an arbitrary orientation. However, the engine is slightly more computationally efficient when the cell is oriented according to the convention used in standalone ReaxFF, i.e. lattice vector
c aligned with the
z axis and vector
b in the
yz plane (zero
x component). The
Lattice block in the system definition then looks like this:
System Lattice xx xy xz 0 yy yz 0 0 zz End End
The only one input key required by the engine is
ForceField, used to select the force field file. Force fields included in the Amsterdam Modeling Suite can be easily accessed using their file name, such as
Type: String Description: Path to the force field parameter file. Absolute path if starting with / or ./, relative to $ADFRESOURCES/ForceFields/ReaxFF otherwise.
Torsions key can be used to enable the improved torsion angle potential. Although the original ReaxFF torsion potential is the default to preserve backward compatibility, the
2013 potential eliminates problematic energy discontinuities and works well with existing force fields.
Type: Multiple Choice Default value: Original Options: [Original, 2013] Description: Version of the torsion potential expression.
The engine can also be switched to a special non-reactive mode useful mainly for initial preparation of molecular dynamics simulations. This mode greatly reduces the occurrence of unwanted reactions when starting from an unrelaxed geometry. In these situations, we recommend running a short simulation with the
NonReactive key to relieve the initial conformational strain and then restarting the MD run without this key.
Note that if you want to resume or extend an interrupted
NonReactive run, it is recommended to also use the
EngineRestart AMS key to supply the last ReaxFF
.rkf file from the previous run. This enables the engine to load the bonding topology used during the previous run and ensure that the simulation is seamlessly restarted. If the
EngineRestart key is not used, bonds will be re-detected in the first step and then preserved during the rest of the simulation.
Type: Bool Default value: False GUI name: Non-reactive Description: Enable the non-reactive mode. Bonds are determined only once at the beginning and subsequent steps only update their bond orders. Thus, no new bonds can form during the simulation, but existing bonds can still stretch and dissociate.
Finally, details of the charge equilibration procedure can be adjusted using the
Charges Converge Charge float End Predictor Method [None | Simple] End Solver [Direct | CG | MINRESQLP | SparseCG | None] End
Type: Block Description: Settings for the polarizable charge model.
Type: Block Description: Controls the convergence criteria for charge equilibration.
Type: Float Default value: 1e-06 Description: Requested upper bound on the sum of squared charge residuals.
Type: Block Description: Settings for the prediction of new charges before running the solver.
Type: Multiple Choice Default value: Simple Options: [None, Simple] Description: Method used to predict the charges.
Type: Multiple Choice Default value: SparseCG Options: [Direct, CG, MINRESQLP, SparseCG, None] Description: Algorithm used to solve the charge equilibration equations.